Publications 2008
Alber F, Förster F, Korkin D, Topf M, Sali A. Integrating Diverse Data for Structure Determination of Macromolecular Assemblies. Annu Rev Biochem. 2008 Jul 7;77:443-477. PMID: 18318657 [PubMed - as supplied by publisher]
Allen WJ, Rothwell PJ, Waksman G. An intramolecular FRET system monitors fingers subdomain opening in Klentaq1. Protein Sci. 2008 Mar;17(3):401-8. PMID: 18287276 [PubMed - indexed for MEDLINE]
Bagnéris C, Ageichik AV, Cronin N, Wallace B, Collins M, Boshoff C, Waksman G, Barrett T. Crystal structure of a vFlip-IKKgamma complex: insights into viral activation of the IKK signalosome. Mol Cell. 2008 Jun 6;30(5):620-31. PMID: 18538660 [PubMed - indexed for MEDLINE]
Baldwin AJ, Anthony-Cahill SJ, Knowles TP, Lippens G, Christodoulou J, Barker PD, Dobson CM. Measurement of amyloid fibril length distributions by inclusion of rotational motion in solution NMR diffusion measurements. Angew Chem Int Ed Engl. 2008;47(18):3385-7. No abstract available. PMID: 18350531 [PubMed - indexed for MEDLINE]
Baldwin AJ, Bader R, Christodoulou J, MacPhee CE, Dobson CM, Barker PD. Cytochrome display on amyloid fibrils. J Am Chem Soc. 2006 Feb 22;128(7):2162-3. PMID: 16478140 [PubMed - indexed for MEDLINE]
Bashton M, Nobeli I, Thornton JM. PROCOGNATE: a cognate ligand domain mapping for enzymes. Nucleic Acids Res. 2008 Jan;36(Database issue):D618-22. Epub 2007 Aug 24. PMID: 17720712 [PubMed - indexed for MEDLINE]
Booth CR, Meyer AS, Cong Y, Topf M, Sali A, Ludtke SJ, Chiu W, Frydman J. Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT. Nat Struct Mol Biol. 2008 Jul;15(7):746-53. Epub 2008 Jun 8. PMID: 18536725 [PubMed - in process]
Bulheller BM, Miles AJ, Wallace BA, Hirst JD. Charge-transfer transitions in the vacuum-ultraviolet of protein circular dichroism spectra. J Phys Chem B. 2008 Feb 14;112(6):1866-74. Epub 2008 Jan 17. PMID: 18198861 [PubMed - indexed for MEDLINE]
Chandramouli P, Topf M, Ménétret JF, Eswar N, Cannone JJ, Gutell RR, Sali A, Akey CW. Structure of the mammalian 80S ribosome at 8.7 A resolution. Structure. 2008 Apr;16(4):535-48. PMID: 18400176 [PubMed - indexed for MEDLINE]
Ciccia A, McDonald N, West SC. Structural and Functional Relationships of the XPF/MUS81 Family of Proteins. Annu Rev Biochem. 2008 Jul 7;77:259-287. PMID: 18518821 [PubMed - as supplied by publisher]
Ciferri C, Pasqualato S, Screpanti E, Varetti G, Santaguida S, Dos Reis G, Maiolica A, Polka J, De Luca JG, De Wulf P, Salek M, Rappsilber J, Moores CA, Salmon ED, Musacchio A. Implications for kinetochore-microtubule attachment from the structure of an engineered Ndc80 complex. Cell. 2008 May 2;133(3):427-39. PMID: 18455984 [PubMed - indexed for MEDLINE]
Clare DK, Stagg S, Quispe J, Farr GW, Horwich AL, Saibil HR. Multiple states of a nucleotide-bound group 2 chaperonin. Structure. 2008 Apr;16(4):528-34. PMID: 18400175 [PubMed - indexed for MEDLINE]
Cong Y, Topf M, Sali A, Matsudaira P, Dougherty M, Chiu W, Schmid MF. Crystallographic conformers of actin in a biologically active bundle of filaments. J Mol Biol. 2008 Jan 11;375(2):331-6. Epub 2007 Oct 16. PMID: 18022194 [PubMed - indexed for MEDLINE]
Cowieson NP, Miles AJ, Robin G, Forwood JK, Kobe B, Martin JL, Wallace BA. Evaluating protein:protein complex formation using synchrotron radiation circular dichroism spectroscopy. Proteins. 2008 Mar;70(4):1142-6. PMID: 17894344 [PubMed - indexed for MEDLINE]
Davies MN, Lamikanra A, Sansom CE, Flower DR, Moss DS, Travers PJ. Identification of the HLA-DM/HLA-DR interface. Mol Immunol. 2008 Feb;45(4):1063-70. Epub 2007 Sep 17. PMID: 17870168 [PubMed - indexed for MEDLINE]
Davies TE, O'Reilly AO, Field LM, Wallace B, Williamson MS. Knockdown resistance to DDT and pyrethroids: from target-site mutations to molecular modelling. Pest Manag Sci. 2008 Jun 17. [Epub ahead of print] PMID: 18561309 [PubMed - as supplied by publisher]
Elad N, Clare DK, Saibil HR, Orlova EV. Detection and separation of heterogeneity in molecular complexes by statistical analysis of their two-dimensional projections. J Struct Biol. 2008 Apr;162(1):108-20. Epub 2007 Nov 22. PMID: 18166488 [PubMed - in process]
Evans P, Slingsby C, Wallace BA. Association of partially folded lens betaB2-crystallins with the alpha-crystallin molecular chaperone. Biochem J. 2008 Feb 1;409(3):691-9. PMID: 17937660 [PubMed - indexed for MEDLINE]
Fabritiis GD, Geroult S, Coveney PV, Waksman G. Insights from the energetics of water binding at the domain-ligand interface of the Src SH2 domain. Proteins. 2008 Apr 2. [Epub ahead of print] PMID: 18384045 [PubMed - as supplied by publisher]
Favia AD, Nobeli I, Glaser F, Thornton JM. Molecular docking for substrate identification: the short-chain dehydrogenases/reductases. J Mol Biol. 2008 Jan 18;375(3):855-74. Epub 2007 Nov 1. PMID: 18036612 [PubMed - indexed for MEDLINE]
Garg R, Riento K, Keep N, Morris JD, Ridley AJ. N-terminus-mediated dimerization of ROCK-I is required for RhoE binding and actin reorganization. Biochem J. 2008 Apr 15;411(2):407-14. PMID: 18215121 [PubMed - indexed for MEDLINE]
Gooptu B, Lomas DA. Polymers and inflammation: disease mechanisms of the serpinopathies. J Exp Med. 2008 Jul 7;205(7):1529-34. PMID: 18591408 [PubMed - in process]
Gsponer J, Christodoulou J, Cavalli A, Bui JM, Richter B, Dobson CM, Vendruscolo M. A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction. Structure. 2008 May;16(5):736-46. PMID: 18462678 [PubMed - in process]
Halling-Brown M, Sansom CE, Davies M, Titball RW, Moss DS. Are bacterial vaccine antigens T-cell epitope depleted? Trends Immunol. 2008 Jul 4. [Epub ahead of print] PMID: 18603471 [PubMed - as supplied by publisher]
Hawkins TA, Haramis AP, Etard C, Prodromou C, Vaughan CK, Ashworth R, Ray S, Behra M, Holder N, Talbot WS, Pearl LH, Strähle U, Wilson SW. The ATPase-dependent chaperoning activity of Hsp90a regulates thick filament formation and integration during skeletal muscle myofibrillogenesis. Development. 2008 Mar;135(6):1147-56. Epub 2008 Feb 6. PMID: 18256191 [PubMed - indexed for MEDLINE]
Kirk R, Laman H, Knowles PP, Murray-Rust J, Lomonosov M, Meziane EK, McDonald NQ. Structure of a conserved dimerisation domain within the F-box protein Fbxo7 and the PI31 proteasome inhibitor. J Biol Chem. 2008 May 20. [Epub ahead of print] PMID: 18495667 [PubMed - as supplied by publisher]
Krojer T, Sawa J, Schäfer E, Saibil HR, Ehrmann M, Clausen T. Structural basis for the regulated protease and chaperone function of DegP. Nature. 2008 Jun 12;453(7197):885-90. Epub 2008 May 21. PMID: 18496527 [PubMed - indexed for MEDLINE]
Lampert A, O'Reilly AO, Dib-Hajj SD, Tyrrell L, Wallace BA, Waxman SG. A pore-blocking hydrophobic motif at the cytoplasmic aperture of the closed-state Nav1.7 channel is disrupted by the erythromelalgia-associated F1449V mutation. J Biol Chem. 2008 Jun 12. [Epub ahead of print] PMID: 18550534 [PubMed - as supplied by publisher]
Lorentzen E, Basquin J, Tomecki R, Dziembowski A, Conti E. Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family. Mol Cell. 2008 Mar 28;29(6):717-28. PMID: 18374646 [PubMed - indexed for MEDLINE]
Lukoyanova N, Saibil HR. Friend or foe: the same fold for attack and defense. Trends Immunol. 2008 Feb;29(2):51-3. Epub 2008 Jan 8. Review. PMID: 18248850 [PubMed - indexed for MEDLINE]
Miles AJ, Drechsler A, Kristan K, Anderluh G, Norton RS, Wallace BA, Separovic F. The effects of lipids on the structure of the eukaryotic cytolysin equinatoxin II: A synchrotron radiation circular dichroism spectroscopic study. Biochim Biophys Acta. 2008 Apr 8. [Epub ahead of print] PMID: 18440301 [PubMed - as supplied by publisher]
Miles AJ, Janes RW, Brown A, Clarke DT, Sutherland JC, Tao Y, Wallace BA, Hoffmann SV. Light flux density threshold at which protein denaturation is induced by synchrotron radiation circular dichroism beamlines. J Synchrotron Radiat. 2008 Jul;15(Pt 4):420-2. Epub 2008 May 8. PMID: 18552437 [PubMed - in process]
Millson SH, Vaughan CK, Zhai C, Ali MM, Panaretou B, Piper PW, Pearl LH, Prodromou C. Chaperone ligand-discrimination by the TPR-domain protein Tah1. Biochem J. 2008 Jul 15;413(2):261-8. PMID: 18412542 [PubMed - in process]
Moores C. Chapter 16 studying microtubules by electron microscopy. Methods Cell Biol. 2008;88:299-317. PMID: 18617040 [PubMed - in process]
Moores CA, Milligan RA. Visualisation of a kinesin-13 motor on microtubule end mimics. J Mol Biol. 2008 Mar 28;377(3):647-54. Epub 2008 Feb 4. PMID: 18294653 [PubMed - indexed for MEDLINE]
Nurani G, Radford M, Charalambous K, O'Reilly AO, Cronin NB, Haque S, Wallace BA. Tetrameric Bacterial Sodium Channels: Characterization of Structure, Stability, and Drug Binding. Biochemistry. 2008 Jul 12. [Epub ahead of print] PMID: 18620425 [PubMed - as supplied by publisher]
Patel P, Harris R, Geddes SM, Strehle EM, Watson JD, Bashir R, Bushby K, Driscoll PC, Keep NH. Solution structure of the inner DysF domain of myoferlin and implications for limb girdle muscular dystrophy type 2b. J Mol Biol. 2008 Jun 20;379(5):981-90. Epub 2008 Apr 26. PMID: 18495154 [PubMed - indexed for MEDLINE]
Pauluhn A, Ahmed H, Lorentzen E, Buchinger S, Schomburg D, Siebers B, Pohl E. Crystal structure and stereochemical studies of KD(P)G aldolase from Thermoproteus tenax. Proteins. 2008 Jul;72(1):35-43. PMID: 18186475 [PubMed - indexed for MEDLINE]
Pournara I, Wernisch L. Using temporal correlation in factor analysis for reconstructing transcription factor activities. EURASIP J Bioinform Syst Biol. 2008:172840. PMID: 18604288 [PubMed - in process]
Remaut H, Tang C, Henderson NS, Pinkner JS, Wang T, Hultgren SJ, Thanassi DG, Waksman G, Li H. Fiber formation across the bacterial outer membrane by the chaperone/usher pathway. Cell. 2008 May 16;133(4):640-52. PMID: 18485872 [PubMed - indexed for MEDLINE]
Rivers RC, Kumita JR, Tartaglia GG, Dedmon MM, Pawar A, Vendruscolo M, Dobson CM, Christodoulou J. Molecular determinants of the aggregation behavior of alpha- and beta-synuclein. Protein Sci. 2008 May;17(5):887-98. PMID: 18436957 [PubMed - indexed for MEDLINE]
Roces L, Knowles PP, Fox G, Juanhuix J, Scaplehorn N, Way M, McDonald NQ. Crystallization and preliminary X-ray diffraction analysis of vaccinia virus H1L phosphatase. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Mar 1;64(Pt 3):190-2. Epub 2008 Feb 23. PMID: 18323605 [PubMed - indexed for MEDLINE]
Rose RJ, Welsh TS, Waksman G, Ashcroft AE, Radford SE, Paci E. Donor-strand exchange in chaperone-assisted pilus assembly revealed in atomic detail by molecular dynamics. J Mol Biol. 2008 Jan 25;375(4):908-19. Epub 2007 Nov 4. PMID: 18054959 [PubMed - indexed for MEDLINE]
Saibil HR. Chaperone machines in action. Curr Opin Struct Biol. 2008 Feb;18(1):35-42. Epub 2008 Feb 1. Review. PMID: 18242075 [PubMed - indexed for MEDLINE]
Salih O, Remaut H, Waksman G, Orlova EV. Structural analysis of the Saf pilus by electron microscopy and image processing. J Mol Biol. 2008 May 23;379(1):174-87. Epub 2008 Apr 3. PMID: 18448124 [PubMed - indexed for MEDLINE]
Serysheva II, Ludtke SJ, Baker ML, Cong Y, Topf M, Eramian D, Sali A, Hamilton SL, Chiu W. Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel. Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9610-5. Epub 2008 Jul 10. PMID: 18621707 [PubMed - in process]
Todman SJ, Halling-Brown MD, Davies MN, Flower DR, Kayikci M, Moss DS. Toward the atomistic simulation of T cell epitopes automated construction of MHC: peptide structures for free energy calculations. J Mol Graph Model. 2008 Feb;26(6):957-61. Epub 2007 Jul 28. PMID: 17766153 [PubMed - indexed for MEDLINE]
Topf M, Lasker K, Webb B, Wolfson H, Chiu W, Sali A. Protein structure fitting and refinement guided by cryo-EM density. Structure. 2008 Feb;16(2):295-307. PMID: 18275820 [PubMed - indexed for MEDLINE]
Whitmore L, Wallace BA. Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases. Biopolymers. 2008 May;89(5):392-400. PMID: 17896349 [PubMed - in process]
Zhang Y, Hatch KA, Wernisch L, Bacon J. A Bayesian Change point model for differential gene expression patterns of the DosR regulon of Mycobacterium tuberculosis. BMC Genomics. 2008 Feb 22;9:87. PMID: 18294384 [PubMed - indexed for MEDLINE]
© 2005 School of Crystallography, Birkbeck College, University of London, Malet Street, London WC1E 7HX, UK
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