Publications Based on Data Collected at
DL Biology & Medicine Stations, 2008
N.B. This list is a compilation of publications, from monthly searches of Science Direct, Highwire, Nature, IUCr and ACS search engines, based on work done at DL on the stations within the Biology and Medicine College.
Journals are listed aphabetically with Impact Factors in brackets.
Any additions are welcome. Please address them to j.m.nicholson@dl.ac.uk
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Publications that Appeared in 2008
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Acta Crystallographica D - Biological Crystallography (1.4)
S. J. Fisher, J. R. Helliwell, S. Khurshid, L. Govada, C. Redwood, J. M. Squire and N. E. Chayen. (2008).
An investigation into the protonation states of the C1 domain of cardiac myosin-binding protein C.
Acta Crystallographica D64, 658-664. (10.1)
T. Jabeen, P. Leonard, H. Jamaluddin and K. R. Acharya. (2008).
Structure of mouse IP-10, a chemokine.
Acta Crystallographica D64, 611-619. (14.2)
K. A. Stewart, D. A. Robinson and A. J. Lapthorn. (2008).
Type II dehydroquinase: molecular replacement with many copies.
Acta Crystallographica D64, 108-118. (9.6)
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Acta Crystallographica F - Structural Biology & Crystallization Communications (-)
L. Xu, S. E. Sedelnikova, P. J. Baker and D. W. Rice. (2008).
Cloning, purification and preliminary crystallographic analysis of a putative DNA-binding membrane protein, YmfM, from Staphylococcus aureus.
Acta Crystallographica F64, 656-658. (10.1)
A. M. Davies, R. Tata, F.-X. Chauviac, B. J. Sutton and P. R. Brown. (2008).
Structure of a putative acetyltransferase (PA1377) from Pseudomonas aeruginosa.
Acta Crystallographica F64, 338-342. (10.1)
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Applied Physics A: Materials Science and Processing (2.0)
Salvado, N., Buti, S., Pantos, E., Bahrami, F., Labrador, A. and Pradell, T. (2008).
The use of combined Synchrotron Radiation micro FT-IR and XRD for the characterization of Romanesque wall paintings.
Applied Physics A: Materials Science and Processing 90, 67-73. (11.1)
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Applied Spectroscopy (1.9)
Kohler, A., Sule-Suso, J., Sockalingum, GD., Tobin, M., Bahrami, F., Yang, Y., Pijanka, J., Dumas, P., Cotte, M., van Pittius, DG., Parkes, G. and Martens, H. (2008).
Estimating and correcting Mie scattering in synchrotron-based microscopic Fourier transform infrared spectra by extended multiplicative signal correction.
Applied Spectroscopy 62 (3), 259-266. (11.1)
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Biochemical Journal (4.2)
Alcock, F.H., Grossmann, J.G., Gentle, I.E., Likic, V.A., Lithgow, T. and Tokatlidis, K. (2008).
Conserved substrate binding by chaperones in the bacterial periplasm and the mitochondrial intermembrane space.
Biochemical Journal 409, 377-387. (2.1)
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Biochemistry (3.8)
Echalier, A., Brittain, T., Wright, J., Boycheva, S., Mortuza, G. B., Fulop, V. and Watmough, N. J. (2008).
Redox-Linked Structural Changes Associated with the Formation of a Catalytically Competent Form of the Diheme Cytochrome c Peroxidase from Pseudomonas aeruginosa.
Biochemistry 47 (7), 1947-1956. (14.2)
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Biochimica et Biophysica Acta (3.3)
Andrew J. Miles, Alison Drechsler, Katarina Kristan, Gregor Anderluh, Raymond S. Norton, B.A. Wallace and Frances Separovic. (2008).
The effects of lipids on the structure of the eukaryotic cytolysin equinatoxin II: A synchrotron radiation circular dichroism spectroscopic study.
Biochimica et Biophysica Acta (BBA) - Biomembranes, available online April 2008. (12.1)
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Biomaterials (4.7)
Sally L. Gras, Anna K. Tickler, Adam M. Squires, Glyn L. Devlin, Michael A. Horton, Christopher M. Dobson and Cait E. MacPhee. (2008).
Functionalised amyloid fibrils for roles in cell adhesion.
Biomaterials 29 (11), 1553-1562. (2.1/14.1)
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Biophysical Journal (4.5)
Deborah J. Tew, Stephen P. Bottomley, David P. Smith, Giuseppe D. Ciccotosto, Jeffrey Babon, Mark G. Hinds, Colin L. Masters, Roberto Cappai and Kevin J. Barnham. (2008).
Stabilization of Neurotoxic Soluble Beta-Sheet-Rich Conformations of the Alzheimer's Disease Amyloid-Beta Peptide.
Biophysical Journal 94, 2752-2766. (12.1)
Stephen E D Webb, Selene K Roberts, Sarah R Needham, Christopher J Tynan, Daniel J Rolfe, Martyn D Winn, David T Clarke, Roger Barraclough and Marisa Martin-Fernandez. (2008).
Single molecule imaging and FLIM show different structures for high and low-affinity EGFRs in A431 cells.
Biophysical Journal 94, 803-819. (13.1)
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Carbohydrate Research (1.7)
T.R. Rudd, M.A. Skidmore, S.E. Guimond, M. Guerrini, C. Cosentino, R. Edge, A. Brown, D.T. Clarke, G. Torri, J.E. Turnbull, R.J. Nichols, D.G. Fernig and E.A. Yates. (2008).
Site-specific interactions of copper (II) ions with heparin revealed with complementary (SRCD, NMR, FTIR and EPR) spectroscopic techniques.
Carbohydrate Research 343 (12), 2184-2193. (12.1)
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Chemistry & Physics of Lipids (2.4)
J.M. Thompson, R.E. Ellis, E.M. Green, C.P. Winlove and P.G. Petrov. (2008).
Spectrin maintains the lateral order in phosphatidylserine monolayers.
Chemistry and Physics of Lipids 151 (1), 66-68. (2.1)
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EMBO Journal (10.1)
Rebecca Conners, Darryl J Hill, Elena Borodina, Christopher Agnew, Sarah J Daniell, Nicholas M Burton, Richard B Sessions, Anthony R Clarke, Lucy E Catto, Donna Lammie, Timothy Wess, R Leo Brady and Mumtaz Virji. (2008).
The Moraxella adhesin UspA1 binds to its human CEACAM1 receptor by a deformable trimeric coiled-coil.
EMBO Journal 27, 1779-1789. (14.1/14.2)
Nikos Pinotsis, Stephan Lange, Jean-Claude Perriard, Dmitri I Svergun and Matthias Wilmanns. (2008).
Molecular basis of the C-terminal tail-to-tail assembly of the sarcomeric filament protein myomesin.
EMBO Journal 27, 253-264. (12.1)
Alexandre R Gingras, Neil Bate, Benjamin T Goult, Larnele Hazelwood, Ilona Canestrelli, J Günter Grossmann, HongJun Liu, Nicholas SM Putz, Gordon CK Roberts, Niels ... (2008).
The structure of the C-terminal actin-binding domain of talin.
EMBO Journal 27, 458-469. (2.1)
Li, Y., Chirgadze, D.Y., Bolanos-Garcia, V.M., Sibanda, B.L., Davies, O.R., Ahnesorg, P., Jackson, S.P. and Blundell, T.L. (2008).
Crystal structure of human XLF/Cernunnos reveals unexpected differences from XRCC4 with implications for NHEJ.
EMBO Journal 27, 290-300. (2.1)
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EMBO Reports (7.7)
Jonathan Rapley, Victor L J Tybulewicz and Katrin Rittinger. (2008).
Crucial structural role for the PH and C1 domains of the Vav1 exchange factor.
EMBO reports 9, 655-661. (10.1)
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European Journal of Phycology (1.5)
Andrew P. Dean, James M. Nicholson and David C. Sigee. (2008).
Synchrotron-based FTIR determination of changing patterns of carbon allocation in laboratory cultures of Chlamydomonas reinhardtii: the impact of phosphorus availability and growth phase.
European Journal of Phycology, in press. (11.1)
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FEBS Letters (3.3)
Christopher A. McDevitt, Chitra A. Shintre, Günter J. Grossmann, Naomi L. Pollock, Stephen M. Prince, Richard Callaghan and Robert C. Ford. (2008).
Structural insights into P-glycoprotein (ABCB1) by small angle X-ray scattering and electron crystallography.
FEBS Letters, available online July 2008. (2.1)
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Food Chemistry (2.4)
Roger H. Bisby, Rachel Brooke and Suppiah Navaratnam. (2008).
Effect of antioxidant oxidation potential in the oxygen radical absorption capacity (ORAC) assay.
Food Chemistry 3 (1), 1002-1007. (0.1/0.2)
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Journal of the American Chemical Society (7.4)
Rudd, T. R., Nichols, R. J. and Yates, E. A. (2008).
Selective Detection of Protein Secondary Structural Changes in Solution Protein-Polysaccharide Complexes Using Vibrational Circular Dichroism (VCD).
Journal of the American Chemical Society 130 (7), 2138-2139. (12.1)
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Journal of Applied Crystallography (5.2)
Attia Boudjemline, David T. Clarke, Neville J. Freeman, James M. Nicholson and Gareth R. Jones. (2008).
Early stages of protein crystallization as revealed by emerging optical waveguide technology.
Journal of Applied Crystallography 41, 523-530. (14.2)
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Journal of Biological Chemistry (5.9)
Noemi Fukuhara, Jason A Howitt, Sadaf-Ahmahni Hussain and Erhard Hohenester. (2008).
Structural and functional analysis of Slit and heparin binding to immunoglobulin-like domains 1 and 2 of Drosophila Robo.
Journal of Biological Chemistry 283, 16226-16234. (9.6/10.1)
Xiaohang Cao, Svetlana Antonyuk, Sai V. Seetharaman, Lisa J. Whitson, Alexander B. Taylor, Stephen P. Holloway, Richard W. Strange, Peter A. Doucette, Joan Selverstone Valentine, Ashutosh Tiwari, Lawrence J. Hayward, Shelby Padua, Jeffrey A. Cohlberg, S. Samar Hasnain and P. John Hart. (2008).
Structures of the G85R variant of SOD1 in Familial ALS.
Journal of Biological Chemistry 283, 16169-16177. (10.1)
Adriana Badarau, Susan J. Firbank, Kevin J. Waldron, Sachiko Yanagisawa, Nigel J. Robinson, Mark J. Banfield and Christopher Dennison. (2008).
Futa2 is a ferric binding protein from synechocystis PCC 6803.
Journal of Biological Chemistry 283, 12520-12527. (10.1)
Lene E. Olesen, Marijn G. J. Ford, Eva M. Schmid, Yvonne Vallis, M. Madan Babu, Peter H. Li, Ian G. Mills, Harvey T. McMahon and Gerrit J. K. Praefcke. (2008).
Solitary and Repetitive Binding Motifs for the AP2 Complex -Appendage in Amphiphysin and Other Accessory Proteins.
Journal of Biological Chemistry 283, 5099-5109. (9.6)
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Journal of Medicinal Chemistry (5.1)
Xiaoan Wen, Hongbin Sun, Jun Liu, Keguang Cheng, Pu Zhang, Liying Zhang, Jia Hao, Luyong Zhang, Peizhou Ni, Spyros E. Zographos, Demetres D. Leonidas, Kyra-Melinda Alexacou, Thanasis Gimisis, Joseph M. Hayes and Nikos G. Oikonomakos. (2008).
Naturally Occurring Pentacyclic Triterpenes as Inhibitors of Glycogen Phosphorylase: Synthesis, Structure-Activity Relationships, and X-ray Crystallographic Studies.
Journal of Medicinal Chemistry 51 (12), 3540-3554. (10.1)
Skidmore, M. A., Dumax-Vorzet, A. F., Guimond, S. E., Rudd, T. R., Edwards, E. A., Turnbull, J. E., Craig, A. G. and Yates, E. A. (2008).
Disruption of Rosetting in Plasmodium falciparum Malaria with Chemically Modified Heparin and Low Molecular Weight Derivatives Possessing Reduced Anticoagulant and Other Serine Protease Inhibition Activities.
Journal of Medicinal Chemistry 51 (5), 1453-1458. (12.1)
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Journal of Molecular Biology (5.2)
Patricia A. Zunszain, Jamie Ghuman, Antony F. McDonagh and Stephen Curry. (2008).
Crystallographic Analysis of Human Serum Albumin Complexed with 4Z,15E-Bilirubin-IXalpha.
Journal of Molecular Biology 381 (2), 394-406. (9.6)
Aiwu Zhou, Zhenquan Wei, Peter L.D. Stanley, Randy J. Read, Penelope E. Stein and Robin W. Carrell. (2008).
The S-to-R Transition of Corticosteroid-Binding Globulin and the Mechanism of Hormone Release.
Journal of Molecular Biology 380 (1), 244-251. (10.1)
Konstantina Kazakou, Daniel E. Holloway, Stephen H. Prior, Vasanta Subramanian and K. Ravi Acharya. (2008).
Ribonuclease A Homologues of the Zebrafish: Polymorphism, Crystal Structures of Two Representatives and their Evolutionary Implications.
Journal of Molecular Biology 380 (1), 206-222. (10.1/14.2)
James A. Garnett, Ferenc Marincs, Simon Baumberg, Peter G. Stockley and Simon E.V. Phillips. (2008).
Structure and function of the arginine repressor-operator complex from Bacillus subtilis.
Journal of Molecular Biology 379 (2), 284-298. (10.1/14.2)
Marcia A.S. Correia, Jose A.M. Prates, Joana Bras, Carlos M.G.A. Fontes, Joseph A. Newman, Richard J. Lewis, Harry J. Gilbert and James E. Flint. (2008).
Crystal Structure of a Cellulosomal Family 3 Carbohydrate Esterase from Clostridium thermocellum Provides Insights into the Mechanism of Substrate Recognition.
Journal of Molecular Biology 379 (1), 64-72. (10.1)
Anthony H. Keeble, Lukasz A. Joachimiak, Maria-Jesus Mate, Nicola Meenan, Nadine Kirkpatrick, David Baker and Colin Kleanthous. (2008).
Experimental and computational analysis of the energetic basis for dual recognition of immunity proteins by colicin endonucleases.
Journal of Molecular Biology 379 (4), 745-759. (10.1)
Lata Govada, Liz Carpenter, Paula C.A. da Fonseca, John R. Helliwell, Pierre Rizkallah, Emily Flashman, Naomi E. Chayen, Charles Redwood and John M. Squire. (2008).
Crystal Structure of the C1 domain of Cardiac Myosin Binding Protein-C: Implications for Hypertrophic Cardiomyopathy.
Journal of Molecular Biology, 378(2), 387-397. (10.1/14.1)
S.C. Onuoha, E.T. Coulstock, J.G. Grossmann and S.E. Jackson. (2008).
Structural studies on the co-chaperone Hop and its complexes with Hsp90.
Journal of Molecular Biology 379 (4), 732-744. (2.1)
Michael A. Hough, Svetlana V. Antonyuk, Richard W. Strange, Robert R. Eady and S. Samar Hasnain. (2008).
Crystallography with on-line optical and X-ray absorption spectroscopy demonstrates an ordered mechanism in Cu-nitrite reductase.
Journal of Molecular Biology 378 (2), 353-361. (10.1)
Federico Carafoli, Jane L. Saffell and Erhard Hohenester. (2008).
Structure of the tandem fibronectin type 3 domains of neural cell adhesion molecule.
Journal of Molecular Biology 377 (2), 524-534. (10.1/14.1)
Gulnahar B. Mortuza, Mark P. Dodding, David C. Goldstone, Lesley F. Haire, Jonathan P. Stoye and Ian A. Taylor. (2008).
Structure of B-MLV capsid amino terminal domain reveals key features of viral tropism, Gag assembly and core formation.
Journal of Molecular Biology 376 (5), 1493-1508. (14.2)
Margit Pedersen, Leila Lo Leggio, J. Günter Grossmann, Sine Larsen and Karin Hammer. (2008).
Identification of Quaternary Structure and functional domains of the CI repressor from Bacteriophage TP901-1.
Journal of Molecular Biology 376 (4), 983-996. (2.1)
Chrislaine Withers-Martinez, Lesley F. Haire, Fiona Hackett, Philip A. Walker, Steven A. Howell, Stephen J. Smerdon, Guy G. Dodson and Michael J. Blackman. (2008).
Malarial EBA-175 region VI crystallographic structure reveals a KIX-like binding interface.
Journal of Molecular Biology 375 (3), 773-781. (10.1)
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Journal of Organic Chemistry (3.8)
Bietti, M. and Capone, A. (2008).
One-Electron Oxidation of 2-(4-Methoxyphenyl)-2-Methylpropanoic and 1-(4-Methoxyphenyl)cyclopropanecarboxylic Acids in Aqueous Solution. The Involvement of Radical Cations and the Influence of Structural Effects and pH on the Side-Chain Fragmentation Reactivity.
Journal of Organic Chemistry 73(2), 618-629. (0.1/0.2)
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Journal of Physical Chemistry (3.0)
Sylvie Beaufils, J. Gunter Grossmann, Anne Renault and Victor M. Bolanos-Garcia. (2008).
Characterization of the Tetratricopeptide-Containing Domain of BUB1, BUBR1, and PP5 Proves That Domain Amphiphilicity over Amino Acid Sequence Specificity Governs Protein Adsorption and Interfacial Activity.
Journal of Physical Chemistry B 112 (27), 7984-7991. (2.1)
Clarke, K., Edge, R., Johnson, V., Land, E. J., Navaratnam, S. & Truscott, T. G. (2008).
Direct Observation of NH2 Reactions with Oxygen, Amino Acids, and Melanins.
Journal of Physical Chemistry A 112 (6), 1234-1237. (0.1/0.2)
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Journal of Structural Biology (3.5)
Craig Boote, Sally Hayes, Simon Jones, Andrew J. Quantock, Paul M. Hocking, Chris F. Inglehearn, Manir Ali and Keith M. Meek. (2008).
Collagen organisation in the chicken cornea and structural alterations in the retinopathy, globe enlarged (rge) phenotype - an x-ray diffraction study.
Journal of Structural Biology 161 (1), 1-8. (14.1)
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Journal of Synchrotron Radiation (2.4)
A. J. Miles, R. W. Janes, A. Brown, D. T. Clarke, J. C. Sutherland, Y. Tao, B. A. Wallace and S. V. Hoffmann. (2008).
Light flux density threshold at which protein denaturation is induced by synchrotron radiation circular dichroism beamlines.
Journal of Synchrotron Radiation 15, 420-422. (12.1)
M. J. Ellis, S. G. Buffey, M. A. Hough and S. S. Hasnain. (2008).
On-line optical and X-ray spectroscopies with crystallography: an integrated approach for determining metalloprotein structures in functionally well-defined states.
Journal of Synchrotron Radiation, in press. (10.1)
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Methods in Cell Biology (0.7)
Stephen J. Perkins, Azubuike I. Okemefuna, Anira N. Fernando, Alexandra Bonner, Hannah E. Gilbert and Patricia B. Furtado. (2008).
X-Ray and Neutron Scattering Data and Their Constrained Molecular Modeling.
Methods in Cell Biology 84, 375-423. (2.1)
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Molecular Cell (14.9)
Anna L. Mallam, Shimobi C. Onuoha, J. Günter Grossmann and Sophie E. Jackson. (2008).
Knotted Fusion Proteins Reveal Unexpected Possibilities in Protein Folding.
Molecular Cell 30 (5), 642-648. (2.1)
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Nature (29.3)
Patrick J. Collins, Lesley F. Haire, Yi Pu Lin, Junfeng Liu, Rupert J. Russell, Philip A. Walker, John J. Skehel, Stephen R. Martin, Alan J. Hay and Steven J. Gamblin. (2008).
Crystal structures of oseltamivir-resistant influenza virus neuraminidase mutants.
Nature, available online May 2008. (10.1)
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Phycological Research (1.1)
David Sigee, Beatriz Estrada, James Nicholson and Andrew Dean. (2008).
Molecular response of Anabaena flos-aquae to differing concentrations of phosphorus: A combined FTIR and X-ray microanalytical study.
Phycological Research, (2008), in press. (11.1)
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Proceedings of the National Academy of Sciences (USA) (10.2)
Kevin J. Barnham, Vijaya B. Kenche, Giuseppe D. Ciccotosto, David P. Smith, Deborah J. Tew, Xiang Liu, Keyla Perez, Greg A. Cranston, Timothy J. Johanssen, Irene Volitakis, Ashley I. Bush, Colin L. Masters, Anthony R. White, Jeffrey P. Smith, Robert A. Cherny and Roberto Cappai. (2008).
Platinum-based inhibitors of amyloid-beta as therapeutic agents for Alzheimer's disease.
PNAS 105, 6813-6818. (12.1)
Long Miao, Orion Vanderlinde, Jun Liu, Richard P. Grant, Alan Wouterse, Katsuya Shimabukuro, Albert Philipse, Murray Stewart, and Thomas M. Roberts. (2008).
The role of filament-packing dynamics in powering amoeboid cell motility.
PNAS 105, 5390-5395. (14.1)
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Radiation Physics and Chemistry (0.9)
K. Clarke, R. Edge, E.J. Land, S. Navaratnam and T.G. Truscott. (2008).
The sulphate radical is not involved in aqueous radiation oxidation processes.
Radiation Physics and Chemistry 77 (1), 49-52. (0.1/0.2)
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Spectrochimica Acta (1.3)
Lisa-Jane R. Marshall, Matthew J. Almond, Samantha R. Cook, Manolis Pantos, Mark J. Tobin and Luanne A. Thomas. (2008).
Mineralised organic remains from cesspits at the roman town of silchester: processes and preservation.
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, available online March 2008. (11.1)
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Stem Cells (7.9)
Michael J. Walsh, Tariq G. Fellous, Azzedine Hammiche, Nigel J. Fullwood, Olaug Grude, Fariba Bahrami, James M. Nicholson, Hubert M. Pollock, Mairi Brittan, Pierre L. Martin-Hirsch, Malcolm R. Alison and Francis L. Martin. (2008).
FTIR micro-spectroscopy identifies symmetric PO2-modifications as a marker of the putative stem cell region of human intestinal crypts.
Stem Cells 26 (1), 108-118. (11.1)
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Last updated 28th July 2008
j.m.nicholson@dl.ac.uk
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